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Close up atoms - by Yifan

   This program measures distance of each atom to [x,y,z], and print out those pdb lines within the threshold.
       closeup pdbfile x y z threshold
       pdbfile is your input pdb file
       x y z are coordinate of a point where distances are measured, you can copy x y z from the pdb line and     
       paste it here
       Threshold is the distance limit of printing the atoms. Only those within this threshold are printed out.
       The serial number field of an ATOM line in the output will be replaced by the atom distance.

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