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Scientific data management, bio-informatics, very large databases, historical databases bibliography

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2006

  • Declarative Querying for Biological Sequences. Sandeep Tata, James S. Friedman, Anand Swaroop. ICDE 2006. (scientific and biological databases and bioinformatics)
  • Mining Shifting-and-Scaling Co-Regulation Patterns on Gene Expression Profiles. Xin Xu, Ying Lu, Anthony K. H. Tung, Wei Wang. ICDE 2006. (scientific and biological databases and bioinformatics) [1]
  • Searching Substructures with Superimposed Distance. Xifeng Yan, Feida Zhu, Jiawei Han, Philip S. Yu. ICDE 2006. (scientific and biological databases and bioinformatics)

2004

  • Adapting a Generic Match Algorithm to Align Ontologies of Human Anatomy. Peter Mork, Philip A. Bernstein. ICDE 2004. (industrial paper, bio-informatics)
  • Engineering a Fast Online Persistent Suffix Tree Construction. Srikanta J. Bedathur, Jayant R. Haritsa. ICDE 2004. (scientific, biological databases, bio-informatics)
  • From Sipping on a Straw to Drinking from a Fire Hose: Data Integration in a Public Genome Database. Joel E. Richardson, James A. Kadin, Judith A. Blake, Carol J. Bult, Janan T. Eppig, Martin Ringwald. ICDE 2004. (industrial paper, bio-informatics)
  • GODIVA: Lightweight Data Management for Scientific Visualization Applications. Xiaosong Ma, Marianne Winslett, John Norris, Xiangmin Jiao, Robert Fiedler. ICDE 2004. (scientific, biological databases, bio-informatics)
  • Stream Query Processing for Healthcare Bio-sensor Applications. Chung-Min Chen, Hira Agrawal, Munir Cochinwala, David Rosenbluth. ICDE 2004. (industrial paper, bio-informatics)
  • Unordered Tree Mining with Applications to Phylogeny. Dennis Shasha, Jason Tsong-Li Wang, Sen Zhang. ICDE 2004. (scientific, biological databases, bio-informatics)


2003

  • A Platform Based on the Multi-dimensional Data Model for Analysis of Bio-Molecular Structures. Srinath Srinivasa, Sujit Kumar. VLDB 2003. (industrial, multidimensionality & bioinformatics)
  • Capturing Global Transactions from Multiple Recovery Log Files in a Partitioned Database System. Chengfei Liu, Bruce G. Lindsay, Serge Bourbonnais, Elizabeth Hamel, Tuong C. Truong, Jens Stankiewitz. VLDB 2003. (industrial, multidimensionality & bioinformatics)
  • Controlling Access to Published Data Using Cryptography. Gerome Miklau, Dan Suciu. VLDB 2003. (access control, bioinformatics & security)
  • Efficient Query Processing for Multi-Dimensionally Clustered Tables in DB2. Bishwaranjan Bhattacharjee, Sriram Padmanabhan, Timothy Malkemus, Tony Lai, Leslie Cranston, Matthew Huras. VLDB 2003. (industrial, multidimensionality & bioinformatics)
  • OASIS: An Online and Accurate Technique for Local-alignment Searches on Biological Sequences. Colin Meek, Jignesh M. Patel, Shruti Kasetty. VLDB 2003. (access control, bioinformatics & security)
  • Privacy-Preserving Indexing of Documents on the Network. Mayank Bawa, Roberto J. Bayardo Jr., Rakesh Agrawal. VLDB 2003. (access control, bioinformatics & security)


2002

  • Automating physical database design in a parallel database. Jun Rao, Chun Zhang, Nimrod Megiddo, Guy M. Lohman. ACM SIGMOD Conference 2002. (industrial, big data)
  • TPC-DS, taking decision support benchmarking to the next level. Meikel Pöss, Bryan Smith, Lubor Kollár, Per-Åke Larson. ACM SIGMOD Conference 2002. (industrial, big data)
  • The SDSS skyserver: public access to the sloan digital sky server data. Alexander S. Szalay, Jim Gray, Ani Thakar, Peter Z. Kunszt, Tanu Malik, Jordan Raddick, Christopher Stoughton, Jan vandenBerg. ACM SIGMOD Conference 2002. (industrial, big data)


2000

  • Handling Very Large Databases with Informix Extended Parallel Server. Andreas Weininger. ACM SIGMOD Conference 2000. (industrial, very large data bases)
  • Internet Traffic Warehouse. Chung-Min Chen, Munir Cochinwala, Claudio Petrone, Marc Pucci, Sunil Samtani, Patrizia Santa, Marco Mesiti. ACM SIGMOD Conference 2000. (industrial, very large data bases)
  • SQLEM: Fast Clustering in SQL using the EM Algorithm. Carlos Ordonez, Paul Cereghini. ACM SIGMOD Conference 2000. (industrial, very large data bases)


1998

  • Migrating Legacy Databases and Applications (Panel). Bhavani M. Thuraisingham, Sandra Heiler, Arnon Rosenthal, Susan Malaika. ICDE 1998. (panel, migrating legacy databases and applications)


1993

  • Algebraic Optimization of Computations over Scientific Databases. Richard H. Wolniewicz, Goetz Graefe. VLDB 1993. (scientific databases)
  • Managing Derived Data in the Gaea Scientific DBMS. Nabil I. Hachem, Ke Qiu, Michael A. Gennert, Matthew O. Ward. VLDB 1993. (scientific databases)
  • Tioga: Providing Data Management Support for Scientific Visualization Applications. Michael Stonebraker, Jolly Chen, Nobuko Nathan, Caroline Paxson, Jiang Wu. VLDB 1993. (scientific databases)


1987

  • A Statistical Interface for Historical Relational Databases. Abdullah Uz Tansel. ICDE 1987. (historical databases)
  • Physical Organization of Temporal Data. Doron Rotem, Arie Segev. ICDE 1987. (historical databases)
  • The Historical Relational Data Model (HRDM) and Algebra Based on Lifespans. James Clifford, Albert Croker. ICDE 1987. (historical databases)


1986

  • Historical Multi-Media Databases. Michel E. Adiba, N. Bui Quang. VLDB 1986. (historical database applications)
  • Temporal Data Management. Arie Shoshani, Kyoji Kawagoe. VLDB 1986. (historical database applications)
  • Using History Information to Process Delayed Database Updates. Sunil K. Sarin, Charles W. Kaufman, Janet E. Somers. VLDB 1986. (historical database applications)


1982

  • A Territorial Database Management System (Abstract). F. Antonacci, P. Dell'Orco, A. Turtur. ACM SIGMOD Conference 1982. (engineering and scientific applications)
  • Efficient Spatial Access to a Data Base. Markku Tamminen. ACM SIGMOD Conference 1982. (engineering and scientific applications)
  • Numerical Database Management System: A Model. O. A. Daini. ACM SIGMOD Conference 1982. (engineering and scientific applications)
  • On Extending the Functions of a Relational Database System. Roger L. Haskin, Raymond A. Lorie. ACM SIGMOD Conference 1982. (engineering and scientific applications)


1979

  • Some Very Large Data Bases in Developing Countries. Sakti P. Ghosh, Alfonso F. Cardenas, Ignacio Mijares, Gio Wiederhold. VLDB 1979. (panel, applications of vldb in developing countries)


1978

  • Natural Language Data Bases. Joseph Raben. VLDB 1978. (panel, data base applications in humanities)

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