This was the 2nd Pixar movie to have outtakes:
- When Woody sits down on the tape, he accidentally gets his bottom stuck in the hole which sets the crew off laughing. After trying to get out, Woody starts to laugh too, asking, "A little help here, please?" and continues laughing as he tries to walk with it still stuck to him.
- When the gang tries to use Rex's head as a battering ram, the air conditioning vent is still screwed on, and they crash into it, then Rex says "Ow!"
- In the Buzz Lightyear aisle at Al's Toy Barn, one of the Buzz Lightyear action figures accidentally burps, and the others start to complain, since it apparently was the fifth time they did that scene.
- When Mrs. Potato Head is packing things for Mr. Potato Head for his trip ("I'm packing you an extra pair of shoes and your angry eyes, just in case."), she puts in:
1. Some Cheese Puffs (if he gets hungry) and a key (unknown purpose for it). 2. A golf ball (if he has time to play golf), a plastic steak, a rubber duckie and a Yo Yo. 3. An extra bouncy bouncy ball and extra teeth (which chatters, causing him to jump). 4. Crayons (if he gets bored) and a lump of blue Play-Doh (which she tries to squeeze in nearly making all of his pieces fall out). 5. A dime to call and Monkey Chow (Mr. Potato Head asks why and she furiously states that it's for the monkeys.) The Barrel of Monkeys start attacking him for the chow, to the point where he says, "Okay, that's it! I draw the line at monkeys! Get my agent on the phone!".
- Between Mr. Potato Head and Mrs. Potato Head segments 1 and 2:
- When Jessie first meets Woody, she plays with his string, accidentally pulling it right out of his back. Woody is heard crashing into some off-screen props. At first, Jessie's stunned for a second, but then cracks up, asking, "Should that be part of the movie now? He lost his string!" before falling to her knees with laughter again along with Woody.
- Between Mr. Potato Head and Mrs. Potato Head segments 2 and 3:
- Slinky, after doing one scene, is complimenting his bottom half, and starts petting it. His bottom half's foot is starting to tap with pleasure.
- Wheezy, when Mike tosses him his microphone, gets hit by it, and becomes worried he "hurt his equipment." In the second take, the microphone hits him again, but this time Wheezy accidentally swallows his new squeaker, and starts coughing.
- Between Mr. Potato Head and Mrs. Potato Head segments 3 and 4:
- Buzz is walking down the aisle of Buzz Lightyear action figures. He sees Woody in one of the boxes, making incredibly silly faces, causing the crew to start laughing, which in turn causes Buzz to hold his hands up and snort with laughter.
- When Buzz pulls up his helmet, a pair of big bushy eyebrows, a mustache and a goatee appear in black marker. The crew starts to laugh, which Buzz sees it and laughs sarcastically, blaming Woody for it; another is where Lenny accidentally leaves two dark circles on Buzz's helmet that resemble glasses, which sets everybody but Buzz off laughing, who once again blames Woody for it; and the final one is where Buzz's wings pop open, with the phrase "This Space For Rent" written on them, Buzz also sees this and walks off, shouting "Darn it, Woody!"
- Between Mr. Potato Head and Mrs. Potato Head segments 4 and 5:
- Flik and Heimlich, two of the characters from A Bug's Life, appear. Flik thinks it's the sequel to their movie, but as Heimlich explains the situation, Buzz is shown chopping through the branch they were standing on.
- When Woody asks if the Roundup Gang would like to become Andy's toys, Stinky Pete, instead of not being inside his box, is still there, with two twin Barbie dolls. Stinky Pete promises them a role in the sequel, only to be embarrassed when he realizes that they were then working on the film, and quickly ushers the Barbie dolls out.
- The three Squeeze Toy Aliens are in the Pizza Planet truck, talking about their careers. One of them reveals that he's going to star in a toothpaste commercial, which the others compliment him on.
After Mr. Potato Head and Mrs. Potato Head segment 5:
- When Stinky Pete says it's Woody's choice to go to the Toy Museum or go back to Andy's, he ruins the dramatic moment by farting loudly, which sets almost everyone off in a fit of laughter, while Stinky Pete apologizes, humorously remarking that must be the reason he's known by his alias.
- The last outtake is Tour Guide Barbie saying "Bye-bye" multiple times, and after the scene's over, she is relieved, saying that her mouth couldn't take much more smiling.